Project Title

Quantum Transport in DNA-based Molecular Wires

Principal Investigators

Prof. Dr. Gianaurelio Cuniberti, Dresden University of Technology [Homepage]

Prof. Dr. Marcus Elstner, University of Karlsruhe [Homepage]

Abstract

Despite great efforts in the experimental and theoretical investigation of DNA charge migration,
no unified explanation of the microscopic mechanisms governing charge transfer/transport has been
achieved up to date. The complexity of this bio-molecule as well as the variety of factors which may
influence charge transfer/transport (solvent, base dynamics, base sequence, metal-molecule contact)
make the existing experimental studies very difficult to analyze. Thus, theory plays a prominent role
by guiding experimental studies and providing them with well-defined predictions concerning the role
of all these factors. In the previous granted phase of this proposal, we have developed a computational
scheme which allows to obtain effective electronic coupling parameters with a comparable accuracy
to that of ab initio approaches. Moreover, we also can include in a straightforward way dynamical
effects –arising either from the internal base-pair dynamics or from the presence of a solvent– into the
electronic parameters. Within the current proposal, we plan to pursue this research and formulate
–relying on the previous results– coarse-grained models for charge transport through DNA. Our focus
will be first the paradigmatic double-strand structure, but in a later phase of the project we will
address in detail the properties of DNA-derivatives, especially G4-DNA and X-DNA, structurally and
thermodynamically more stable than dsDNA and may thus be better candidates for an employment
in molecular electronic devices.

Highlight Papers

References
3.
Tomás Kubar, Ulrich Kleinekathöfer and Marcus Elstner
Solvent Fluctuations Drive the Hole Transfer in DNA: A Mixed Quantum-Classical Study
The Journal of Physical Chemistry,
July 2009
2.
P. Benjamin Woiczikowski, Tomáš Kubar, Rafael Gutiérrez, Rodrigo A. Caetano et al.
Combined density functional theory and Landauer approach for hole transfer in DNA along classical molecular dynamics trajectories
The Journal of Chemical Physics,
June 2009
1.
R. A. Caetano, G. Cuniberti, M. Elstner, R. Gutiérrez et al.
Charge Transport through Biomolecular Wires in a Solvent: Bridging Molecular Dynamics and Model Hamiltonian Approaches
Phys.Rev.Lett,
May 2009
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